國立台灣科技大學 資訊工程系所

智慧型系統實驗室


研 究 資 源


Bioinformatics

Special Issue


Journal: Information Sciences
ISSN : 0020-0255
Volume : 139
Issue : 1-2
Date : Nov-2001

Please note that abstracts are freely accessible by all, full text is
restricted to subscribers only.


pp 1-2
Bioinformatics
J.R. Gattiker, J.T.L. Wang, P.P. Wang

pp 3-17
Experiences applying meta-data to bioinformatics
T. Critchlow, R. Musick, T. Slezak

pp 19-57
Approaches to visualisation in bioinformatics: from dendrograms to Space
Explorer
M. Schroeder, D. Gilbert, J. van Helden, P. Noy

pp 59-77
A new algorithm for computing similarity between RNA structures
G.D. Collins, S. Le, K. Zhang

pp 79-96
Self-organizing maps in mining gene expression data
K. Torkkola, R. Mike Gardner, T. Kaysser-Kranich, C. Ma

pp 97-112
A discrete-valued clustering algorithm with applications to biomolecular
data
A.K.C. Wong, D.K.Y. Chiu, W. Huang

pp 113-138
A hybrid method for protein sequence modeling with improved accuracy
B. Olsson, K. Laurio, L. Gudjonsson

pp 139-163
Effective hidden Markov models for detecting splicing junction sites in DNA
sequences
M.M. Yin, J.T.L. Wang

Tutorial/Servey


1. Rost, Burkhard, “Review: Protein Secondary Structure Prediction Continues to Rise”, Journal of Structural Biology Volume: 134, Issue: 2-3, May, 2001, pp. 204-218

2. Daxin jiang, Chun Tang, and Aidong Zhang, “Cluster Analysis for Gene Expression Data: A survey”, IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, VOL.16, NO.11, November 2004

Paper Collection


J. Herrero, R. D’yaz-Uriarte and J. Dopazo “Gene expression data preprocessing”, BIOINFORMATICS APPLICATIONS NOTE Vol. 19 no. 5 2003, pages 655–656 DOI: 10.1093/bioinformatics/btg04015, 2003

Lukasz Salwinski and David Eisenberg, "Computational methods of analysis of protein-protein interaction", Structural Biology 2003, 12:377-382

Xiaochun Yang and Bin Wang, “Weave amino acid sequences for protein secondary structure prediction.”, June 2003 Proceedings of the 8th ACM SIGMOD workshop on Research issues in data mining and knowledge discovery

Chun-Ting Zhang, Ren Zhang, "Q9, a content-balancing accuracy index to evalute algorithms of protein secondary structure prediction", The International Journal of Biochemistry & Cell Biology 35 (2003) 1256-1262

Pierre Baldi and Gianluca Pollastri, “A Machine Learning Strategy for Protein Analysis”, Intelligent Systems, IEEE , Volume: 17 Issue: 2 , March-April 2002 Page(s): 28 -35

Akinobu Sugiyama, Manabu Kotani. “Analysis of Gene Expression Data by using Self-Organizing Maps and K-mans Clustering”, Neural Networks, 2002. IJCNN '02. Proceedings of the 2002 International Joint Conference on , Volume: 2 , 12-17, Page(s): 1342 -1345, May 2002

Alexander Sturn, John Quackenbush and Zlatko Trajanoski, “Genesis: cluster analysis of microarray data”, BIOINFORMATICS APPLICATIONS NOTE vol.18 no. 1 2002 Pages 207-208, 2002

Lynette Hirschman, Jong C. Park, Junichi Tsujii, Limsoon Wong and Cathy H.Wu, "Accomplishments and challenges in literature data mining for biology", BIOINFORMATICS REVIEW Vol. 18 no. 12 2002 Pages 1553-1561

S. Hua and Z. Sun., “A Novel Method of Protein Secondary Structure Prediction with High Segment Overlap Measure: Support Vector Machine Approach.”, Bioinformatics, 308:397-407, 2001

Brown,M.P., Grundy,W.N., Lin,D., Cristianini,N., Sugnet,C.W., Furey,T.S., Ares,M.Jr. and Haussler,D. “Knowledge-based analysis of microarray gene expression data by using support vector machines”. Proc. Natl Acad. Sci. USA, 97,262-267., 2000

Chen,Y., Bittner,M.L. and Rougherty,E.R.
”Issues associated with microarray data analysis and integration”. Nature Genet., 22, 213–215., 1999

Rost, Burkhard; Schneider, Reinhard; Sander, Chris, “Protein Fold Recognition by Prediction-based Threading”, Journal of Molecular Biology Volume: 270, Issue: 3, July 18, 1997, pp. 471-480

B. Rost and C. Sander., “Prediction of protein secondary structure at better than 70% accuracy.”, Journal of Molecular Biology, 232(2):584-599, 1993